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Book

Singh RK, R Singh, G Ye, A Selvi, and GP Rao 2009. Molecular Breeding in Crops:  Principle, Method and Application. Studium Press, LLC, Texas, USA.

Book Chapters

Ye G, and M Van Ginkel 2011. Designing marker-assisted inbred line development strategies using computer simulation. Plant Breeding Reviews 34: 297-348

Ye G, and KF Smith 2010. Marker-assisted gene pyramiding for cultivar development. Plant Breeding Reviews 33: 219-256

Ye G, FC Ogbonnaya, and M Van Ginkel 2009. The use of marker-assisted recurrent backcrossing in cultivar development. In Singh RK, R Singh, G Ye, A Selvi, and GP Rao (Eds). Molecular Breeding in Crops: Principle, Method and Application. Pp 295-319. Studium Press, LLC, Texas, USA.

Ye G, KF Smith 2009. Marker-assisted gene pyramiding. In Singh RK, R Singh, G Ye, A Selvi, and GP Rao (Eds).  Molecular Plant Breeding:  Principle, Method and Application. Pp 321-342.. Studium Press, LLC, Texas, USA

Ye G , and M. Van Ginkel 2009. Formulating marker-assisted selection strategies using computer simulation. In Singh RK, R Singh, G Ye, A Selvi, and GP Rao (Eds).  Molecular Breeding in Crops: Principle, Method and Application. Pp 421-444. Studium Press, LLC, Texas, USA.

Referred Journal Papers

Meng L, L Guo, K Ponce, X Zhao, and G Ye. 2016 Characterization of three indica rice multiparent advanced generation intercross (MAGIC) populations for QTL indentification. The Plant Genome doi: 10.3835/plantgenome2015.10.0109

Meng L, X Zhao, K Ponce, G Ye, and H Leung. 2016 QTL mapping for agronomic traits using multi-parent advanced generation inter-cross (MAGIC) populations derived from diverse elite indica rice lines. Field Crops Research doi:10.1016/j.fcr.2016.02.004

Liang S, C Sun , G Ren, X Zhao, M Zhou, D McNeil, and G Ye. 2016 Usefulness of the cloned and fine-mapped genes/QTL for grain yield and related traits in indica rice breeding for irrigated ecosystems. Field Crops Research 187:58-73

Liang S, G Ren, J Liu, X Zhao, M Zhou, D McNeil, and G Ye* 2015 Genotype-by-environment interaction is important for grain yield in irrigated lowland rice. Field Crops Research 180: 90-99

Qin M, X Zhao, J Ru, G Zhang*, and G Ye* 2015 Bigenic epistasis between QTLs for heading date in rice analyzed using single segment substitution lines. Field Crops Research 178: 16-25

Qiu X, Y Pang, Z Yuan, D Xing, J Xu*, M Dingkuhn, Z Li, and G Ye* 2015 Genome-wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm. Plos One DOI:10.1371/journal.pone.0145577

Qiu X, Z Yuan, H Liu, X Xiang, L Yang, W He, B Du, G Ye, J Xu, and D Xing 2015 Identification of salt tolerance‐improving quantitative trait loci alleles from a salt‐susceptible rice breeding line by introgression breeding. Plant Breeding 134: 653-660

Zhao X, L Zhou, K Ponce, and G Ye* 2015 The Usefulness of Known Genes/Qtls for Grain Quality Traits in an Indica Population of Diverse Breeding Lines Tested using Association Analysis. Rice 8: 1-13

Zhou L, S Liang, K Ponce, M Severino, G Ye*, and X Zhao* 2015 Factors affecting head rice yield and chalkiness in indica rice. Field Crops Research 172: 1-10

Zhou L, S Liang, K Ponce, G Ye* and X Zhao* 2015 identification of tightly-linked markers for the genic male sterile gene of ms-IR36 in rice (Oryza sativa L.). Philippine Journal of Crop Science 40: 1-7

Zhu Y, Chen K, X Mi, T Chen, J Ali, G Ye, J Xu, and Z Li 2015 Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice. Plos One DOI:10.1371/journal.pone.0145704

Guo LB, and G Ye* 2014. Use of major quantitative trait loci to improve grain yield of rice. Rice Science 21:65-82

Ying Y, H Zhu, G Ye, G Zhang, L Li, and G Liu 2014. Detection of QTL on panicle number in rice (Oryza sativa L.) under different densities with single segment substitution lines. Euphytica 195:355-368

Li Z, Ye G, Yang M, Liu Z, Lu D, Mao X, Wu Q, and X Li 2014. Genetic characterization of a multiparent recombinant inbred line of rice population. Research on Crops 15:28-37

Zhang H, H Wang, G Ye, Y Qian, Y Shi, J Xia, Z Li, L Zhu, Y Gao and Z Li 2012 Improvement of yield and its related traits of backbone hybrid rice parent Minghui86 using advanced backcross breeding strategies. Journal of Integrative Agriculture (In press)

Cheng LR, JM Wang, G Ye, CG Luo, J Xu, and ZK Li 2012.Identification of stably expressed QTL for heading date using reciprocal introgression line and recombinant inbred line populations in rice. Genetics Research Cambridge 94:245-253

Liu G, Zhu H, Zhang G, Li L, and G Ye* 2012. Dynamic analysis of tiller number QTLs in rice (Oryza sativa L.) with single segment substitution lines. Theoretical and Applied Genetics 125: 143-153

Mulki MA,  A Jighly, G Ye, LC. Emebiri, D Moody,O Ansari, and FC Ogbonnaya 2012. Association mapping for soilborne pathogen resistancein synthetic hexaploid wheat. Molecular Breeding DOI 10.1007/s11032-012-9790-z

Vikram P, B P Mallikarjuna Swamy, S Dixit, H Ahmed,  MT Sta Cruz, A Singh, G Ye, and A Kumar 2012. Bulk segregant analysis: “An effective approach for mapping consistent-effect drought grain yield QTLs in rice”. Field Crops Research 134: 185–192

Wei D, K Cui. G Ye, J Pan, J Xiang, J Huang, and L Nie 2012. QTL mapping for nitrogen-use efficiency and nitrogen-deficiency tolerance traits in rice. Plant and Soil 359: 281-295

Li CD, ZY Bai, G Ye, M Mi, S Chapman, SM Reader and CJ Liu 2011 The Chromosomal Control of Leaf Characteristics of Early-Stage Plants in Wheat (Triticum aestivum L.). Agricultural Sciences in China 10: 159-165

Wei D, K Cui K. J Pan, G Ye, J Xiang, L Nie, and J Huang 2011. Genetic dissection of grain nitrogen use efficiency and grain yield and their relationship in rice.  Field Crops Research 124: 340–346

Ye G, S Liang and JM Wan 2010. Mapping protein content in rice using single segment chromosome substitution lines. Theoretical and Applied Genetics 121: 741-750

Kaur S, NOI Cogan, G. Ye, RC Baillie, ML Hand, AE Ling, AK McGearey, J. Kaur, CJ Hopkins, M. Todorovic, M. Mountford, D. Edwards, J. Batley, W. Burton, P. Salisbury, N. Gororo, S. Marcroft, G. Kearney, KF Smith, JW Forster, and GC Spangenberg 2009.Genetic map construction and QTL mapping of disease resistance to blackleg (Leptosphaeria maculans) in cultivars of Australian canola (Brassica napus L.). Theoretical and Applied Genetics 120: 71-83

Li W, T Zhang, M. Dieters, and G Ye* 2009. The effects of component trait selection on genetic gain of lint yield in upland cotton breeding program investigated using simulation. SABRAO Journal of Breeding and Genetics 41: 83-100

Liu SM, G Ye, KF Smith, and S Richards 2009. Segregation and transmission of scab reactions in pear breeding progenies under orchard diseased conditions. Scientica Horticulturae 120: 222-229

Wang Y, G Ye , N Luan, J Xiao, Y Chen, and DH Chen 2009. Boll size affects the insecticidal protein content in Bacillus thuringiensis (Bt) cotton. Field Crops Research 110: 106-110

Ogbonnaya FC, M Imtiaz M, G Ye, PR Hearnden, E Hernandez, RF Eastwood, and M Van Ginkel 2008. Genetic and QTL analyses of seed dormancy and preharvest sprouting resistance in the wheat germplasm CN10955.  Theoretical and Applied Genetics 116: 891-902

Zhang Y, Q Zhang, ZH He, Y Zhang, RJ Peña, and G Ye 2008.  Solvent retention capacities as indirect selection criteria for sugar snap cookie quality in Chinese soft wheat genotypes. Australian Journal of Agricultural Research 59: 911-917

Ye G, and KF Smith 2008. Marker-assisted gene pyramiding for inbred line development: Basic principles and practical guidelines (Invited Review). International Journal of Plant Breeding 2: 1- 10

Ye G, and KF Smith 2008. Marker-assisted gene pyramiding for inbred line development: Practical applications (Invited Review). International Journal of Plant Breeding 2: 11-22

He H, L Xu,  X Peng,G Yang, C Zhu, Z Liu, and G Ye* 2007. Molecular tagging of the male fertility restorer gene for the 501-8S cytoplasmic male sterility in rapeseed (Brassica napus. L.). Australian Journal of Agricultural Research 58: 753-758

Li H, G Ye, and J Wang 2007. A Modified Algorithm for improvement of Composite Interval Mapping (CIM). Genetics 175: 361-374

Ogbonnaya FC, G Ye, R Trethowan, F Dreccer, J Shepperd, and M van Ginkel 2007 Yield of synthetic backcross-derived lines in rainfed environments of Australia. Euphytica 157: 321-336

Ye G, D Moody, L Emebiri, and M van Ginkel 2007. Designing an optimal marker-based pedigree selection strategy for parent building in barley in the presence of repulsion linkage, using computer simulation. Australian Journal of Agricultural Research 58: 243-251

Zhang X, L Zhang, G Ye, Y Wang, Y Chen, and DH Chen 2007.  The impact of introducing the Bacillus thuringiensis gene into cotton on boll nitrogen metabolism. Environmental and Experimental Botany 61: 175-180

Zhang X, G Ye, L Zhang,  Y Wang, Y Chen, and DH Chen 2007. Effect of gibberellic acid and zeatin on boll development in trans-Bacillus thuringiensis gene cotton. Field Crops Research 103: 5- 10

He H, X Peng, H Gong, C Zhu, and G Ye* 2006. Fertility behaviour of rice (Oryza sativa) lines with dominant sterile gene and inheritance of male sterility and fertility restoration. Field Crops Research 98: 30 - 38

He H, X Peng, H Gong, C Zhu, and G Ye* 2006. Characterisation of male sterility line of indica rice (Oryza sativa,Spp. Indica). Australian Journal of Agricultural Research 57: 457 – 464

Zhang Y, ZH He, A Zhang, M van Ginkel, and G Ye 2006. Pattern analysis of grain yield performance of Chinese and CIMMYT spring wheat cultivars in China’s spring wheat regions and CIMMYT’s management environments. Euphytica 147: 409-420

Zhang Y, ZH He, A Zhang, M Ginkel, RJ Peña, and G Ye 2006. Pattern analysis on protein properties of Chinese and CIMMYT spring wheat cultivars grown in China’s spring wheat regions and CIMMYT’s managed environments. Australian Journal of Agricultural Research 57: 811-822

Kuchel H, G Ye, R Fox, and S Jefferies 2005. Genetic and Economic Analysis of a Targeted Marker Assisted Wheat Breeding Strategy. Molecular Breeding 16: 67-78

Chen DH, G Ye, C Yang, Y Chen, and Y Wu 2005. Effect of high temperature on the insecticidal properties of Bt Cotton. Environmental and Experimental Botany 53: 333-342

Chen DH, G Ye, C Yang, Y Chen, and Y Wu 2005. Effect of introducing Bacillus thuringigesis gene on nitrogen metabolism in Cotton. Field Crops Research 92: 1-9

Zhang Y, Y Zhang, ZH He, and G Ye 2005. Milling quality and protein properties of autumn-sown Chinese wheats evaluated through multilocational trials. Euphytica 143: 209-222

Wang J, M van Ginkel, R Trethowan, G. Ye, IH DeLacy, D Podlich, and M. Cooper 2004. Simulating the effects of dominance and epistasis on selection response in the CIMMYT Wheat Breeding Program using QuCim. Crop Science 44: 2006-2018

Zhang Y, ZH He, G. Ye, A Zhang, and M Van Ginkel 2004. Effect of environment and genotype on bread-making quality of spring-sown spring wheat cultivars in China. Euphytica 139: 75-83

Wang J, M. van Ginkel, D Podlich, G Ye, R Trethowan, W Pfeiffer, IH DeLacy, M Cooper, and Rajaram, 2003. Comparison of two breeding strategies by computer simulation. Crop Science 43: 1764-1773

Ye G, DL McNeil, and GD Hill 2003. Inheritance of foliar resistance to Ascochyta Blight in Lentil (Lens culinaris Medik). New Zealand Journal of Crop and Horticultural Science 31: 77-83

Ye G, DL McNeil, and GD Hill 2002. Breeding for Ascochyta blight resistance in Lentil. Plant Breeding 121: 185-191

Ye G, DL McNeil, and GD Hill 2002. Minor genes are involved in Ascochyta blight resistance in lentil. Journal of Genetics and Breeding 56: 21-28

Ye G, DL McNeil, AJ Conner, and GD Hill 2002. Multiple shoot formation from lentil seeds. New Zealand Journal of Crop and Horticultural Science 30: 1-8.

Ye G, DL McNeil, AJ Conner, and GD Hill 2000.  Improved protocol for the multiplication of lentil hybrids without genetic change by culturing single node explants. SABRAO Journal of Breeding & Genetics 32:13-21.

Referred Conference Papers

Ye G, MJ Dieters, A Pudmenzky, K Micallef,  and KE Basford 2004. Simulation of positive assortative mating for Inbred Line development using QU-GENE. 4th International Crop Science Congress: New Direction for A Diverse Planet.  Brisbane, Australia.

Ye, G, HA Eagles, and MJ Dieters 2004. Parental selection using known genes for inbred line development. Cereals 2004, Proceedings of 54th Australian Cereal Chemistry Conferences and 11th Wheat Breeders Assembly Pp. 245-248

Ye, G, and MJ Dieters  2004. Comparison of Modified Bulk/Pedigree and Bulk Methods using QU-GENE. Cereals 2004, Proceedings of 54th Australian Cereal Chemistry Conferences and 11th Wheat Breeders Assembly Pp. 202-205

Eagles HA, DB Moody, RF Eastwood, GJ Hollamby, GB Cornish, KA Cane, G Ye and PJ Martin 2004. Using data from plant breeding programs to estimate gene effects. Cereals 2004, Proceedings of 54th Australian Cereal Chemistry Conferences and 11th Wheat Breeders Assembly Pp 210-213

Ye G, DL McNeil, and GD Hill 2001.  Genetic variation for minor genes conditioning Ascochyta blight resistance in lentils. 4th European Conference on Grain Legumes , Cracow. Pp. 240-241

Ye G, DL McNeil, and GD Hill 2001. Inheritance of resistance to Ascochyta blight in lentil. New Zealand Plant protection 54: 198-201

Ye G, DL McNeil, and GD Hill 2000.  Some methods for analysing multisite plant variety trials. I. Estimating genotype means at each site. Agronomy New Zealand 31: 13-24

Ye G, DL McNeil, and GD Hill 2000.  Some methods for analysing multisite plant variety trials. II. Selection for yield and stability. Agronomy New Zealand 31: 25-33

Ye G, DL McNeil, and GD Hill 2000.  Two major genes confer Ascochyta blight resistance in Lens orientalis. New Zealand Plant protection 53: 109-133.

Ye G, DL McNeil, and GD Hill 2000.  Lentil Ascochyta blight and breeding for its resistance. New Zealand Plant protection 53: 97-102.

Ye G, X Shen, and MD Wilcox 1995. Breeding strategies for Paulownia in China. In X Shen (ed) Proceeding of Asia-pacific seminar on tree breeding. Chinese Forestry Publishing House.

*: Corresponding author